This problem was introduced in IGV version 2.9.0. ![]() IGV 2.9.2, released February 2021įixes a bug where IGV eventually freezes with multiple error messages if you visit enough loacations in a BigWig track. Contributed by University of Melbourne Centre for Cancer Research (UMCCR). ( Git issue 881)įixes issue with federated Amazon S3 support. narrowpeak files would sometimes be colored incorrectly, while tracks from. Bed files can be whitespace delimited, multiple consecutive tabs = a single "whitespace". Handle bed files with columns separated by multiple tabs ( Git issue #890). The name panel displayed extra characters for tracks loaded from URLs that had parameters with slashes ("/"). For example, if chromosome 1 was specified as "1" in the file and as "chr1" in the reference genome. IGV would sometimes freeze when receiving commands from a port.īigbed tracks were not handling chromosome aliasing, causing the track not to load in some cases. New option to group alignments by reference concordance. ( Git issue #852)Ĭhanging the track color for feature tracks now supports setting different colors for the postive and negative strands. New alignment track menu item to copy a clipped read sequence to the clipboard. Respect maxPanelHeight when creating snapshots. Download a version of Git that is compatible with your version of Bitbucket from the Git website. setShowSequenceTranslation - valid values (case insensitive): true, false The open source Git project has just released Git 2.9.0, with a variety of features and bug fixes. ![]() setSequenceStrand - valid values (case insensitive): +, postive, -, negative.New batch commands to control the sequence track. ( Git issue #836, PR #868) New colorBy batch command to control coloring of alignments. Major improvements to performance and stability of IGV batch execution. This release includes the following new features and improvements:
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